tighten workflow diagrams

1 files changed, 26 insertions, 26 deletions

diff --git a/workflow/phases.cwl b/workflow/phases.cwl
index 208ef63..3158170 100755
--- a/workflow/phases.cwl
+++ b/workflow/phases.cwl
@@ -7,56 +7,56 @@ $namespaces:
   license: https://spdx.org/licenses/
 
 inputs:
-  annotated_markdown: File
+  annotated_Markdown: File
 
 outputs:
-  annotated_html:
+  Markdown_with_metadata:
     type: File
-    outputSource: phase3_convert_to_html/html_with_rdfa
-  annotated_pdf:
+    outputSource: phase2_extract/markdown
+  annotated_HTML:
     type: File
-    outputSource: phase3_convert_to_pdf/latex_with_xmp
-  markdown_with_metadata:
+    outputSource: phase3_translate_to_RDFa/html_with_rdfa
+  annotated_PDF:
     type: File
-    outputSource: phase2_extract/markdown
-  plain_markdown:
+    outputSource: phase3_translate_to_XMP/latex_with_xmp
+  plain_Markdown:
     type: File
     outputSource: phase1_strip/markdown
 
 steps:
-  phase3_convert_to_html:
+  phase1_strip:
     in:
-      input_file: annotated_markdown
+      input_file: annotated_Markdown
       output_format:
-        default: html
+        default: commonmark
     run: pandoc-filter-tool.cwl
     out:
-    - html_with_rdfa
-    - latex_with_xmp
-  phase3_convert_to_pdf:
+    - markdown
+  phase2_extract:
     in:
-      input_file: annotated_markdown
+      input_file: annotated_Markdown
       output_format:
-        default: pdf
+        default: commonmark
     run: pandoc-filter-tool.cwl
     out:
-    - html_with_rdfa
-    - latex_with_xmp
-  phase2_extract:
+    - markdown
+  phase3_translate_to_RDFa:
     in:
-      input_file: annotated_markdown
+      input_file: annotated_Markdown
       output_format:
-        default: commonmark
+        default: html
     run: pandoc-filter-tool.cwl
     out:
-    - markdown
-  phase1_strip:
+    - html_with_rdfa
+    - latex_with_xmp
+  phase3_translate_to_XMP:
     in:
-      input_file: annotated_markdown
+      input_file: annotated_Markdown
       output_format:
-        default: commonmark
+        default: pdf
     run: pandoc-filter-tool.cwl
     out:
-    - markdown
+    - html_with_rdfa
+    - latex_with_xmp
 dc:license: license:GPL-3.0-or-later
 dc:rights: Copyright 2025, Jonas Smedegaard <dr@jones.dk>