add workflow diagrams

1 files changed, 25 insertions, 0 deletions

diff --git a/workflow/phase1.cwl b/workflow/phase1.cwl
new file mode 100755
index 0000000..f531e69
--- /dev/null
+++ b/workflow/phase1.cwl
@@ -0,0 +1,25 @@
+#!/usr/bin/env cwl-runner
+
+cwlVersion: v1.0
+class: Workflow
+$namespaces:
+  dc: http://purl.org/dc/elements/1.1/
+  license: https://spdx.org/licenses/
+
+inputs:
+  annotated_markdown: File
+
+outputs:
+  plain_markdown:
+    type: File
+    outputSource: strip/markdown
+
+steps:
+  strip:
+    in:
+      input_file: annotated_markdown
+    run: pandoc-filter-tool.cwl
+    out:
+    - markdown
+dc:license: license:GPL-3.0-or-later
+dc:rights: Copyright 2025, Jonas Smedegaard <dr@jones.dk>