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On my initial ikiwiki -setup auto.setup, I get the following error:

shortcut plugin will not work without shortcuts.mdwn
/home/turian/utils/etc/ikiwiki/auto.setup: ikiwiki --refresh --setup /home/turian/iki.setup failed at IkiWiki/Setup/Automator.pm line 105.

This is using the latest git pull of ikiwiki. I am not sure why it is not finding shortcuts.mdwn. -- [[JosephTurian]]

The error, and the weird paths suggest to me that you have installed ikiwiki in a strange way, and it is failing to find its basewiki underlay. The $installdir is hardcoded into IkiWiki.pm at build time, based on the PREFIX setting (see README).

If that's not set right, you'll have other problems than just this one, so I suggest you check how you installed ikiwiki.

Anyway, I've made the shortcut plugin only warn about this.. --[[Joey]]