From b6b5c9e32bd53adec873e6efdd9b896eefcb7c30 Mon Sep 17 00:00:00 2001
From: Jonas Smedegaard <dr@jones.dk>
Date: Sat, 24 May 2025 09:48:09 +0200
Subject: tighten workflow diagrams

---
 workflow/phase1.cwl |  6 +++---
 workflow/phases.cwl | 52 ++++++++++++++++++++++++++--------------------------
 2 files changed, 29 insertions(+), 29 deletions(-)

(limited to 'workflow')

diff --git a/workflow/phase1.cwl b/workflow/phase1.cwl
index 1aa0bc2..d4d40c0 100755
--- a/workflow/phase1.cwl
+++ b/workflow/phase1.cwl
@@ -7,17 +7,17 @@ $namespaces:
   license: https://spdx.org/licenses/
 
 inputs:
-  annotated_markdown: File
+  annotated_Markdown: File
 
 outputs:
-  plain_markdown:
+  plain_Markdown:
     type: File
     outputSource: strip/markdown
 
 steps:
   strip:
     in:
-      input_file: annotated_markdown
+      input_file: annotated_Markdown
       output_format:
         default: commonmark
     run: pandoc-filter-tool.cwl
diff --git a/workflow/phases.cwl b/workflow/phases.cwl
index 208ef63..3158170 100755
--- a/workflow/phases.cwl
+++ b/workflow/phases.cwl
@@ -7,56 +7,56 @@ $namespaces:
   license: https://spdx.org/licenses/
 
 inputs:
-  annotated_markdown: File
+  annotated_Markdown: File
 
 outputs:
-  annotated_html:
+  Markdown_with_metadata:
     type: File
-    outputSource: phase3_convert_to_html/html_with_rdfa
-  annotated_pdf:
+    outputSource: phase2_extract/markdown
+  annotated_HTML:
     type: File
-    outputSource: phase3_convert_to_pdf/latex_with_xmp
-  markdown_with_metadata:
+    outputSource: phase3_translate_to_RDFa/html_with_rdfa
+  annotated_PDF:
     type: File
-    outputSource: phase2_extract/markdown
-  plain_markdown:
+    outputSource: phase3_translate_to_XMP/latex_with_xmp
+  plain_Markdown:
     type: File
     outputSource: phase1_strip/markdown
 
 steps:
-  phase3_convert_to_html:
+  phase1_strip:
     in:
-      input_file: annotated_markdown
+      input_file: annotated_Markdown
       output_format:
-        default: html
+        default: commonmark
     run: pandoc-filter-tool.cwl
     out:
-    - html_with_rdfa
-    - latex_with_xmp
-  phase3_convert_to_pdf:
+    - markdown
+  phase2_extract:
     in:
-      input_file: annotated_markdown
+      input_file: annotated_Markdown
       output_format:
-        default: pdf
+        default: commonmark
     run: pandoc-filter-tool.cwl
     out:
-    - html_with_rdfa
-    - latex_with_xmp
-  phase2_extract:
+    - markdown
+  phase3_translate_to_RDFa:
     in:
-      input_file: annotated_markdown
+      input_file: annotated_Markdown
       output_format:
-        default: commonmark
+        default: html
     run: pandoc-filter-tool.cwl
     out:
-    - markdown
-  phase1_strip:
+    - html_with_rdfa
+    - latex_with_xmp
+  phase3_translate_to_XMP:
     in:
-      input_file: annotated_markdown
+      input_file: annotated_Markdown
       output_format:
-        default: commonmark
+        default: pdf
     run: pandoc-filter-tool.cwl
     out:
-    - markdown
+    - html_with_rdfa
+    - latex_with_xmp
 dc:license: license:GPL-3.0-or-later
 dc:rights: Copyright 2025, Jonas Smedegaard <dr@jones.dk>
-- 
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