prepend phase to step, to sort top-down

1 files changed, 8 insertions, 8 deletions

diff --git a/workflow/phases.cwl b/workflow/phases.cwl
index e4562be..208ef63 100755
--- a/workflow/phases.cwl
+++ b/workflow/phases.cwl
@@ -12,19 +12,19 @@ inputs:
 outputs:
   annotated_html:
     type: File
-    outputSource: convert_to_html/html_with_rdfa
+    outputSource: phase3_convert_to_html/html_with_rdfa
   annotated_pdf:
     type: File
-    outputSource: convert_to_pdf/latex_with_xmp
+    outputSource: phase3_convert_to_pdf/latex_with_xmp
   markdown_with_metadata:
     type: File
-    outputSource: extract/markdown
+    outputSource: phase2_extract/markdown
   plain_markdown:
     type: File
-    outputSource: strip/markdown
+    outputSource: phase1_strip/markdown
 
 steps:
-  convert_to_html:
+  phase3_convert_to_html:
     in:
       input_file: annotated_markdown
       output_format:
@@ -33,7 +33,7 @@ steps:
     out:
     - html_with_rdfa
     - latex_with_xmp
-  convert_to_pdf:
+  phase3_convert_to_pdf:
     in:
       input_file: annotated_markdown
       output_format:
@@ -42,7 +42,7 @@ steps:
     out:
     - html_with_rdfa
     - latex_with_xmp
-  extract:
+  phase2_extract:
     in:
       input_file: annotated_markdown
       output_format:
@@ -50,7 +50,7 @@ steps:
     run: pandoc-filter-tool.cwl
     out:
     - markdown
-  strip:
+  phase1_strip:
     in:
       input_file: annotated_markdown
       output_format: