It seems that the orphans plugin doesn't recognize markdown-style links of the kind:

    [Pretty link name](realname)

In my wiki, the page "realname" shows up as an orphan although it's being linked to.

> Like anything in ikiwiki that deals with links, this only takes
> [[WikiLinks|ikiwiki/wikilink]] into account. There should be no real
> reason to use other link mechanisms provided by eg, markdown for internal
> links in the wiki (indeed, using them is likely to cause broken links
> when doing things like inlining or renaming pages). --[[Joey]]